Programme
Veuillez trouver également la liste des présentations.
| | Lundi 23 | Mardi 24 |
|---|
| 9h |
Accueil |
Oratrice invitée: Annie Chateau
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes |
| - |
Variants
Vincent Sater
UMI-Gen: a new UMI-based read simulator for variant calling evaluation in paired-end sequencing |
| 10h |
Variants
Brice Letcher
Enabling multiscale variation analysis with genome graphs |
k-mers
Téo Lemane
kmtricks: modular k-mer count matrix and Bloom filter construction for large read collections |
| - |
Pause |
Pause |
| 11h |
Omics
Albane Lysiak
Evaluation of open search methods based on theoretical mass spectra comparison |
k-mers
Yoshihiro Shibuya
Set-min sketch: a probabilistic map for power-law distributions with applications to k-mer annotation |
| - |
Omics
Vincent Rocher
DeepG4 : A deep learning approach to predict active G-quadruplexes |
k-mers
Nikolai Romashchenko
Phylo k-mers: constructing phylogenetically-informed k-mers for phylogenetic placement and recombination detection |
| 12h |
Omics
Nesrine Sghaier
Prediction of auxin response elements based on data fusion approach |
k-mers
Pierre Marijon
Correcting Long-Reads with k-mers: A Dream Comes True |
| - |
Pause repas |
Pause repas |
| 13h |
| - |
| 14h |
Orateur invité: Paolo Ribeca
SASSY: Accurately reconstructing viral genomes |
Sequence
Matthias Zytnicki
srnaMapper: an optimal mapping tool for sRNA-Seq reads |
| - |
Sequence
Antoine Amarilli
Efficient enumeration of regex matches |
| 15h |
Sequencing data
Grégoire Siekaniec
Identification of bacterial strains using Oxford Nanopore sequencing |
Sequence
Garance Gourdel
Hide and Mine in Strings: Hardness and Algorithms |
| - |
Pause |
Pause |
| 16h |
Sequencing data
Clara Delahaye
Nanopore MinION long read sequencer: an overview of its error landscape |
Graphs
Éric Rivals
Efficient Construction of Hierarchical Overlap Graphs |
| - |
Sequencing data
Andreea Dréau
Contig error correction based on linked-read sequencing data |
Graphs
Sammy Khalife
Sequence graphs realizations |
| 17h |
Présentation des nouveaux |
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