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Liste des présentationsVeuillez trouver ici les actes des journées. Veuillez également trouver le programme synthétique. Présentation du GT [slides] Présentation des nouveaux arrivants Orateurs invités Paolo Ribeca (modératrice: Sarah Djebali-Quelen) lundi 14h-15h Annie Chateau (modérateur: Matthias Zytnicki) mardi 9h-10h Variants (modérateur: Pierre Peterlongo) Vincent Sater, Pierre-Julien Viailly, Thierry Lecroq, Philippe Ruminy, Élise Prieur-Gaston, Caroline Bérard and Fabrice Jardin: UMI-Gen: a new UMI-based read simulator for variant calling evaluation in paired-end sequencing [soumission] [slides] Brice Letcher, Martin Hunt and Zamin Iqbal: Enabling multiscale variation analysis with genome graphs [soumission][slides] Omics (modératrice: Nathalie Vialaneix) Albane Lysiak, Guillaume Fertin, Géraldine Jean and Dominique Tessier: Evaluation of open search methods based on theoretical mass spectra comparison [soumission][slides] Vincent Rocher, Matthieu Genais, Elissar Nassereddine and Raphael Mourad: DeepG4 : A deep learning approach to predict active G-quadruplexes [soumission][slides] Nesrine Sghaier, Rayda Ben Ayed and Ahmed Rebai: Prediction of auxin response elements based on data fusion approach [soumission][slides] Sequencing data (modératrice: Claire Lemaitre) Grégoire Siekaniec: Identification of bacterial strains using Oxford Nanopore sequencing [soumission][slides] Clara Delahaye and Jacques Nicolas: Nanopore MinION long read sequencer: an overview of its error landscape [soumission][slides] Andreea Dréau, Clément Birbes, Christophe Klopp and Matthias Zytnicki: Contig error correction based on linked-read sequencing data [soumission][slides] k-mers (modérateur: Thierry Lecroq) Téo Lemane, Rayan Chikhi and Pierre Peterlongo: kmtricks: modular k-mer count matrix and Bloom filter construction for large read collections [soumission][slides] Yoshihiro Shibuya and Gregory Kucherov: Set-min sketch: a probabilistic map for power-law distributions with applications to k-mer annotation [soumission][slides] Nikolai Romashchenko, Benjamin Linard, Fabio Pardi and Eric Rivals: Phylo k-mers: constructing phylogenetically-informed k-mers for phylogenetic placement and recombination detection [soumission][slides] Pierre Marijon, Philipp Spohr and Antoine Limaset: Correcting Long-Reads with k-mers: A Dream Comes True [soumission][slides] Sequences (modérateur: Yann Ponty) Matthias Zytnicki and Christine Gaspin: srnaMapper: an optimal mapping tool for sRNA-Seq reads [soumission] [slides] Antoine Amarilli: Efficient enumeration of regex matches [soumission][slides] Garance Gourdel: Hide and Mine in Strings: Hardness and Algorithms [soumission][slides] Graphs (modérateur: Rayan Chikhi) Sung Gwan Park, Bastien Cazaux, Kunsoo Park and Eric Rivals: Efficient Construction of Hierarchical Overlap Graphs [soumission][slides] Sammy Khalife, Yann Ponty and Laurent Bulteau: Sequence graphs realizations [soumission][slides] |
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